1 资料与方法
1.1 研究设计
1.2 研究对象
1.3 IS诊断信息的收集
1.4 基因组信息的收集
1.5 BMI多基因评分的构建
1.6 统计学分析
1.6.1 统计描述
1.6.2 筛选与BMI和IS存在遗传多效性的SNP集合
1.6.3 单位点SNP与IS的关联分析与验证
1.6.4 注释和富集
2 结果
2.1 研究对象的一般特征
表1 研究对象的基本特征Table 1 Basic characteristics of participants |
| Items | Total (n=541) | Participants with IS (n=276) | Participants without IS (n=265) | P value |
| Age/years, ${\bar x}$±s | 58.4±8.1 | 60.1±7.4 | 56.6±8.5 | < 0.001 |
| Male, n (%) | 310 (57.3) | 171 (62.0) | 139 (52.5) | 0.032 |
| Married, n (%) | 468 (86.5) | 236 (85.5) | 232 (87.5) | 0.872 |
| Junior high school education or above, n (%) | 290 (53.6) | 136 (49.3) | 154 (58.1) | 0.048 |
| Smoker, n (%) | 287 (53.1) | 147 (53.3) | 140 (52.8) | 0.957 |
| Drinker, n (%) | 243 (44.9) | 131 (47.5) | 112 (42.3) | 0.227 |
| Adequate exercise, n (%) | 159 (29.4) | 86 (31.2) | 73 (27.5) | 0.193 |
| BMI/(kg/m2), ${\bar x}$±s | 26.2±3.4 | 26.2±3.3 | 26.3±3.6 | 0.637 |
| Diabetes, n (%) | 172 (31.8) | 94 (34.1) | 78 (29.4) | 0.288 |
| Hypertension, n (%) | 276 (51.0) | 158 (57.2) | 118 (44.5) | 0.004 |
| Hyperlipidemia, n (%) | 179 (33.1) | 114 (41.3) | 65 (24.5) | < 0.001 |
| BMI-PRS, ${\bar x}$±s | 0.040±0.162 | 0.047±0.157 | 0.032±0.166 | 0.284 |
IS, ischemic stroke; BMI, body mass index; BMI-PRS, BMI polygenic risk score which SNP with P < 5×10-8 were included to calculate PRS;SNP, single nucleotide polymorphism; PRS, polygenic risk score. |
2.2 识别与BMI和IS存在遗传多效性的SNP集合
表2 BMI多基因风险与IS的关联Table 2 Association of BMI polygenic risk with IS |
| P | SNPn | DEV (mean) | PpTDT | hSNPn2 | R2 |
| 5×10-7 | 399 | 0.081 | 0.126 | 1×10-6 | 6.99×10-4 |
| 5×10-6 | 644 | 0.088 | 0.095 | 1×10-6 | 6.91×10-4 |
| 5×10-5 | 1 244 | 0.052 | 0.242 | 1×10-6 | 2.06×10-4 |
| 5×10-4 | 3 031 | 0.080 | 0.072 | 2×10-6 | 1.20×10-3 |
| 5×10-3 | 9 172 | 0.045 | 0.314 | 2×10-6 | 3.89×10-4 |
P is the P value for SNP that comprise the PRS; SNPn is the number of SNP filtered under different P; DEV, differences of BMI PRS between siblings with IS and without IS; PpTDT is the significance for the pTDT test; hSNPn2, heritability of SNPn for IS; R2, R-square for liner regression of IS and BMI PRS. IS, ischemic stroke; BMI, body mass index; SNP, single nucleotide polymorphism; PRS, polygenic risk score; pTDT, polygenic transmission disequilibrium test; DEV, deviation. |
2.3 分析与IS存在关联的SNP位点
表3 与IS同时存在连锁与关联的SNP对应的基因座及其映射基因Table 3 SNP that are linked and associated with IS corresponded to genomic risk loci and mapped gene |
| SNP | Cytogenetic band | Genomic risk loci (chromosome: start position-end position) | Gene |
| rs118074101 | 1p13.3 | 1:110750031-110750031 | KCNC4, SLC6A7 |
| rs12093350 | 1q22 | 1: 155468732-155793969 | ASH1L, MSTO1, YY1AP1, DAP3, GON4L |
| rs2232852 | 1q32.1 | 1:202924936-202938778 | ADIPOR1, CYB5R1 |
| rs34378983 | 1q32.3 | 1:214331416-214404556 | |
| rs75747776 | 2p24.1 | 2:20409638-20502198 | SDC1, PUM2 |
| rs12612799 | 2p16.1 | 2:56316415-56385145 | |
| rs147755783 | 2q24.1 | 2:158031410-158031410 | |
| rs1460669 | 2q24.3 | 2:164613829-164653060 | |
| rs141123347 | 2q24.3 | 2:169174780-169174780 | |
| rs17053757 | 3p21.1 | 3:54169266-54171774 | CACNA2D3 |
| rs10025110 | 4p12 | 4:44901237-45014151 | |
| rs59257388 | 4q21.22 | 4:83203517-83270007 | HNRNPD |
| rs3811801 | 4q23 | 4:100244319-100336102 | ADH1B, ADH1C, ADH7 |
| rs76339045 | 4q32.3 | 4:167710607-167710607 | SPOCK3 |
| rs13177532 | 5p13.2 | 5:36728340-36783545 | |
| rs12656015 | 5q11.2 | 5:53089622-53160978 | |
| rs7723244 | 5q22.1 | 5:111261184-111443109 | NREP |
| rs2043478 | 5q31.2 | 5:136498493-136498493 | SPOCK1 |
| rs181895 | 5q31.3 | 5:141769375-141822539 | |
| rs2062536 | 5q34 | 5:165795362-165795362 | |
| rs368399960 | 6p21.32 | 6:32300809-32331002 | C6orf10 |
| rs13202872 | 6p12.3 | 6:51189632-51264082 | |
| rs6947395 | 7q11.22 | 7:69403462-69406661 | AUTS2 |
| rs10268638 | 7q33 | 7:137100832-137129484 | DKGI |
| rs6999964 | 8q24.22 | 8:132862920-132862920 | |
| rs10961656 | 9p22.3 | 9:14639666-14694602 | ZDHHC21 |
| rs12343952 | 9q33.1 | 9:122445599-122497319 | |
| rs74829026 | 10p15.3 | 10:2298746-2298746 | |
| rs117023276 | 10p12.31 | 10:21246955-21291331 | NEBL |
| rs138468034 | 10q22.2 | 10:77321693-77366416 | C10orf11 |
| rs664706 | 10q23.31 | 10:89773567-89777068 | |
| rs192881652 | 11p15.1 | 11:18034532-18034532 | TPH1, SERGEF |
| rs308754 | 11q14.2 | 11:88161676-88172516 | |
| rs1820460 | 12q23.3 | 12:107704705-107704705 | BTBD11 |
| rs4477562 rs2785821 | 13q14.3 | 13:54091759-54272104 | |
| rs11631335 | 15q15.1 | 15:40395604-40421006 | BMF |
| rs9646281 | 16q12.1 | 16:52264631-52264631 | |
| rs75659809 | 16q23.1 | 16:77018698-77018698 | |
| rs11877418 | 18q11.2 | 18:20748733-20787099 | CABLES1, TMEM241 |
| rs77247480 rs56080693 | 18q12.1 | 18:27163063-27426754 | |
| rs148990504 | 18q21.31 | 18:54255607-54255607 | TXNL1 |
| rs769449 | 19q13.32 | 19:45410002-45428234 | TOMM40, APOE, APOC1 |
| rs117988645 | 22q11.21 | 22:20093967-20174270 | DGCR8, TRMT2A, RANBP1, ZDHHC8, AC006547.14 |
IS, ischemic stroke; SNP, single nucleotide polymorphism. |
表4 通过与IS关联分析验证的SNP位点Table 4 SNP verified by association analysis |
| SNP | Effect allele | MAF | OR(95%CI) | P |
| rs2232852 | C | 0.387 | 1.53 (1.21-1.94) | 4.582×10-5 |
| rs1460669 | T | 0.415 | 1.37 (1.08-1.73) | 0.010 |
| rs12343952 | T | 0.247 | 1.42 (1.07-1.90) | 0.017 |
| rs75659809 | T | 0.009 | 0.25 (0.07-0.85) | 0.026 |
| rs141123347 | G | 0.013 | 0.32 (0.12-0.88) | 0.027 |
| rs11631335 | G | 0.236 | 0.77 (0.60-1.00) | 0.049 |
IS, ischemic stroke; SNP, single nucleotide polymorphism; MAF, minor allele frequency. |