1 材料与方法
1.1 主要材料与仪器
1.2 实时荧光定量聚合酶链式反应(quantitative real-time polymerase chain reaction,qRT-PCR)检测细胞中DANCR、miR-656、BMPR1A表达水平
表1 qRT-PCR引物序列Table 1 Sequence of qRT-PCR primers |
| Primer name | Orientation | Sequence(5′ to 3′) |
| DANCR | Forward | GCGCCACTATGTAGCGGGTT |
| Reverse | TCAATGGCTTGTGCCTGTAGTT | |
| miR-656 | Forward | GTCAGAAAATGGAGTAACCTTA |
| Reverse | GTCAGAAAATGGAGTAACCTTA | |
| BMPR1A | Forward | TAGTTCGCTGAACCAATAAAGG |
| Reverse | GTCAGAAAATGGAGTAACCTTA | |
| β-actin | Forward | GCTAATATCTATAATC |
| Reverse | GAGGCTATCTTCATAGAT | |
| U6 | Forward | CTCGCTTCGGCAGCACA |
| Reverse | AACGCTTCACGAATTTGCGT |
qRT-PCR, quantitative real-time polymerase chain reaction; LncRNA, long non-coding RNA; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
1.3 细胞分组及处理
1.4 CCK-8法检测细胞增殖
1.5 Transwell实验检测细胞迁移、侵袭
1.6 流式细胞术检测细胞凋亡
1.7 qRT-PCR检测U87细胞中DANCR、miR-656、BMPR1A表达水平
1.8 验证DANCR、miR-656的靶向关系
1.9 Western blot检测BMPR1A、PD-1、PD-L1蛋白表达水平
1.10 统计学分析
2 结果
2.1 细胞DANCR、miR-656、BMPR1A mRNA表达水平
表2 比较细胞中DANCR、miR-656、BMPR1A mRNA的表达Table 2 Comparison of mRNA expression of DANCR, miR-656 and BMPR1A in cells |
| Group | DANCR | miR-656 | BMPR1A mRNA |
| NHA | 0.94±0.10 | 0.92±0.10 | 1.02±0.11 |
| LN229 | 1.51±0.16* | 0.66±0.07* | 1.41±0.15* |
| U251 | 1.55±0.16* | 0.62±0.07* | 1.47±0.15* |
| A172 | 1.62±0.17* | 0.58±0.06* | 1.57±0.16* |
| U87 | 2.03±0.21* | 0.42±0.05* | 2.03±0.21* |
Data are $\bar x \pm s$, n=6. *P<0.05, compared with NHA cells. DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A; NHA, normal human astrocytes. |
2.2 各组U87细胞中的细胞增殖率变化
表3 各组U87细胞增殖率的变化Table 3 Changes in proliferation rate of U87 cells in each group |
| Group | Proliferation rate/% |
| Blank | 94.22±4.51 |
| NC sh | 94.11±4.49 |
| sh-DANCR | 47.52±4.82a,b |
| pcDNA 3.1 | 94.24±4.49 |
| pcDNA 3.1 DANCR | 125.34±6.85c |
| sh-DANCR+NC inhibitor | 47.67±4.79 |
| sh-DANCR+miR-656 inhibitor | 72.14±7.31d |
| sh-DANCR+pcDNA 3.1 | 47.72±4.81 |
| sh-DANCR+pcDNA 3.1 BMPR1A | 72.54±7.38e |
Data are $\bar x \pm s$, n=6. a, P<0.05, compared with the blank group; b, P<0.05, compared with the NC sh group; c, P<0.05, compared with pcDNA 3.1 group; d, P<0.05, compared with the sh-DANCR + NC inhibitor group; e, P<0.05, compared with the sh-DANCR+pcDNA 3.1 group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
2.3 各组U87细胞中侵袭、迁移变化
图1 观察U87细胞侵袭变化Figure 1 Observation of invasion changes of U87 cells NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
图2 观察U87细胞迁移变化Figure 2 Observation of migration changes of U87 cells NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
表4 U87细胞侵袭、迁移数变化Table 4 Changes in invasion and migration numbers of U87 cells |
| Groups | Invasion count | Migration count |
| Blank | 112.46±11.34 | 102.61±10.47 |
| NC sh | 108.94±11.27 | 105.81±10.62 |
| sh-DANCR | 70.88±7.18a, b | 51.46±5.24a, b |
| pcDNA 3.1 | 111.74±11.20 | 104.55±10.53 |
| pcDNA 3.1 DANCR | 150.54±15.21c | 145.84±14.75c |
| sh-DANCR+NC inhibitor | 71.44±7.21 | 52.37±5.31 |
| sh-DANCR+miR-656 inhibitor | 108.72±11.04d | 91.48±9.25d |
| sh-DANCR+pcDNA 3.1 | 71.67±7.20 | 52.53±5.29 |
| sh-DANCR+pcDNA 3.1 BMPR1A | 109.34±11.07e | 91.66±9.28e |
Data are $\bar x \pm s$, n=6. a, P<0.05, compared with the blank group; b, P<0.05, compared with the NC sh group; c, P<0.05, compared with pcDNA 3.1 group; d, P<0.05, compared with the sh-DANCR + NC inhibitor group; e, P<0.05, compared with the sh-DANCR+pcDNA 3.1 group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
2.4 各组U87细胞中凋亡率变化
图3 观察U87细胞凋亡变化Figure 3 Observation of apoptosis changes of U87 cells NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
表5 U87细胞各组细胞的凋亡率Table 5 The apoptosis rates of U87 cells in each group |
| Group | Apoptosis rate/% |
| Blank | 12.51±1.28 |
| NC sh | 12.63±1.29 |
| sh-DANCR | 37.82±3.86a, b |
| pcDNA 3.1 | 12.58±1.28 |
| pcDNA 3.1 DANCR | 7.67±0.79c |
| sh-DANCR+NC inhibitor | 37.64±3.79 |
| sh-DANCR+miR-656 inhibitor | 21.04±2.18d |
| sh-DANCR+pcDNA 3.1 | 37.74±3.82 |
| sh-DANCR+pcDNA 3.1 BMPR1A | 21.17±2.24e |
Data are $\bar x \pm s$, n=6. a, P<0.05, compared with the blank group; b, P<0.05, compared with the NC sh group; c, P<0.05, compared with pcDNA 3.1 group; d, P<0.05, compared with the sh-DANCR + NC inhibitor group; e, P<0.05, compared with the sh-DANCR+pcDNA 3.1 group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
2.5 各组U87细胞中DANCR、miR-656、BMPR1A mRNA表达
表6 U87细胞DANCR、miR-656、BMPR1A mRNA表达变化Table 6 Changes in mRNA expression of DANCR, miR-656, and BMPR1A in U87 cells |
| Group | DANCR | miR-656 | BMPR1A mRNA |
| Blank | 1.05±0.11 | 0.98±0.10 | 0.94±0.10 |
| NC sh | 1.06±0.11 | 1.02±0.11 | 0.98±0.10 |
| sh-DANCR | 0.45±0.05a, b | 1.67±0.18a, b | 0.55±0.06a, b |
| pcDNA 3.1 | 0.97±0.10 | 0.92±0.10 | 1.05±0.11 |
| pcDNA 3.1 DANCR | 1.55±0.16c | 0.57±0.06c | 1.72±0.18c |
| sh-DANCR+NC inhibitor | 0.48±0.05 | 1.64±0.18 | 0.58±0.06 |
| sh-DANCR+miR-656 inhibitor | 0.46±0.05 | 1.08±0.11d | 0.88±0.09d |
| sh-DANCR+pcDNA 3.1 | 0.47±0.05 | 1.62±0.18 | 0.56±0.06 |
| sh-DANCR+pcDNA 3.1 BMPR1A | 0.42±0.05 | 1.59±0.11 | 0.83±0.09e |
Data are $\bar x \pm s$, n=6. a, P<0.05, compared with the blank group; b, P<0.05, compared with the NC sh group; c, P<0.05, compared with pcDNA 3.1 group; d, P<0.05, compared with the sh-DANCR + NC inhibitor group; e, P<0.05, compared with the sh-DANCR+pcDNA 3.1 group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
2.6 验证DANCR、miR-656的靶向关系
图4 DANCR、miR-656结合位点Figure 4 Binding sites of DANCR and miR-656 DANCR, differentiation antagonizing non-protein coding RNA; WT, wild-type; MUT, mutant. |
表7 DANCR、miR-656靶向关系Table 7 Verification of targeting relationship between DANCR and miR-656 |
| Group | relative luciferase activity |
| NC mimics+DANCR-WT | 1.07±0.11 |
| miR-656 mimics+DANCR-WT | 0.62±0.07a |
| NC mimics+DANCR-MUT | 1.03±0.11 |
| miR-656 mimics+DANCR-MUT | 1.06±0.11 |
Data are $\bar x \pm s$. n=6. a, P <0.05, compared with the NC mimics+ DANCR-WT. NC, negative control; DANCR, differentiation antagonizing non-protein coding RNA; WT, wild-type; MUT, mutant. |
2.7 各组U87细胞中BMPR1A、PD-1、PD-L1蛋白表达水平
图5 细胞中BMPR1A、PD-1、PD-L1蛋白表达Figure 5 Expression of BMPR1A, PD-1, and PD-L1 proteins in cells A, blank group; B, NC sh group; C, sh-DANCR group; D, pcDNA 3.1 group; E, pcDNA 3.1 DANCR group; F, sh-DANCR + NC inhibitor group; G, sh-DANCR + miR-656 inhibitor group; H, sh-DANCR + pcDNA 3.1 group; I, sh-DANCR + pcDNA 3.1 BMPR1A group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |
表8 U87细胞BMPR1A、PD-1、PD-L1表达变化Table 8 Changes in the expression of BMPR1A, PD-1, and PD-L1 in U87 cells |
| Groups | BMPR1A/β-actin | PD-1/β-actin | PD-L1/β-actin |
| Blank | 1.24±0.13 | 0.83±0.09 | 0.77±0.08 |
| NC sh | 1.27±0.13 | 0.87±0.09 | 0.71±0.08 |
| sh-DANCR | 0.65±0.07a,b | 0.41±0.05a,b | 0.34±0.04a,b |
| pcDNA 3.1 | 1.25±0.13 | 0.85±0.09 | 0.75±0.08 |
| pcDNA 3.1 DANCR | 1.68±0.17c | 1.37±0.14c | 1.14±0.12c |
| sh-DANCR+NC inhibitor | 0.68±0.07 | 0.48±0.05 | 0.36±0.04 |
| sh-DANCR+miR-656 inhibitor | 0.92±0.10d | 0.78±0.08d | 0.64±0.07d |
| sh-DANCR+pcDNA 3.1 | 0.65±0.07 | 0.46±0.05 | 0.37±0.04 |
| sh-DANCR+pcDNA 3.1 BMPR1A | 0.97±0.10e | 0.72±0.08e | 0.66±0.07e |
Data are $\bar x \pm s$, n=6. a, P<0.05, compared with the blank group; b, P<0.05, compared with the NC sh group; c, P<0.05, compared with pcDNA 3.1 group; d, P<0.05, compared with the sh-DANCR + NC inhibitor group; e, P<0.05, compared with the sh-DANCR+pcDNA 3.1 group. NC, negative control; sh, short hairpin; DANCR, differentiation antagonizing non-protein coding RNA; BMPR1A, bone morphogenetic protein receptor type 1A. |